MIGS Cultured Bacterial/Archaeal sample from Atopo... - BioSample

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Result Filters

Identifiers: BioSample: SAMN00001474; Sample name: BCM-HMP0073; SRA: SRS001939

Organism: Fannyhessea vaginae DSM 15829
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Coriobacteriales; Atopobiaceae; Fannyhessea; Fannyhessea vaginae

Attributes

strain	DSM 15829
estimated size	1433000
culture collection	ATCC:BAA-55
local-scale environmental context	Homo sapiens-associated habitat [ENVO:00009003]
investigation type	missing
host taxonomy ID	9606 (9606)
environmental medium	biological product [ENVO:02000043]
number of replicons	not determined
reference for biomaterial	not determined
geographic location	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
latitude and longitude	not determined
environmental package	missing
collection date	not determined
host	Homo sapiens
isolation and growth condition	not determined
source material identifiers	ATCC BAA-55, DSM 15829, CCUG 38953, CIP 106431
project name	Atopobium vaginae DSM 15829
isolation source	vagina
misc_param: HMP supersite	urogenital_tract
project_type	Reference Genome
nucleic acid extraction	not determined
finishing strategy (depth of coverage)	Level 3: Improved-High-Quality Draft21.65x;61
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
sequencing method	454-GS-FLX, Illumina, Sanger
assembly	Newbler v. 2.0.01.12
misc_param: HMP body site	Vaginal
type-material	type strain of Atopobium vaginae